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1.
Int J Biol Macromol ; 263(Pt 2): 130347, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38401583

RESUMEN

Polypeptide N-acetylgalactosamine transferase 9 (GALNT9) catalyzes the initial step of mucin-type O-glycosylation via linking N-acetylgalactosamine (GalNAc) to serine/threonine in a protein. To unravel the association of GALNT9 with Parkinson's disease (PD), a progressive neurodegenerative disorder, GALNT9 levels were evaluated in the patients with PD and mice treated with 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine, and statistically analyzed based on the GEO datasets of GSE114918 and GSE216281. Glycoproteins with exposing GalNAc were purified using lectin affinity chromatography and identified by LC-MS/MS. The influence of GALNT9 on cells was evaluated via introducing a GALNT9-specific siRNA into SH-SY5Y cells. Consequently, GALNT9 deficiency was found to occur under PD conditions. GALNT9 silencing contributed to a causative factor in PD pathogenesis via reducing the levels of intracellular dopamine, tyrosine hydroxylase and soluble α-synuclein, and promoting α-synuclein aggregates. MS identification revealed 14 glycoproteins. 5 glycoproteins, including ACO2, ATP5B, CKB, CKMT1A, ALDOC, were associated with energy metabolism. GALNT9 silencing resulted in mitochondrial dysfunctions via increasing ROS accumulation, mitochondrial membrane depolarization, mPTPs opening, Ca2+ releasing and activation of the CytC-related apoptotic pathway. The dysfunctional mitochondria then triggered mitophagy, possibly intermediated by adenine nucleotide translocase 1. Our study suggests that GALNT9 is potentially developed into an auxiliary diagnostic index and therapeutic target of PD.


Asunto(s)
Enfermedades Mitocondriales , N-Acetilgalactosaminiltransferasas , Neuroblastoma , Enfermedad de Parkinson , Humanos , Ratones , Animales , Enfermedad de Parkinson/metabolismo , alfa-Sinucleína/química , Acetilgalactosamina/química , Transferasas , Cromatografía Liquida , Espectrometría de Masas en Tándem , Péptidos , Glicoproteínas , N-Acetilgalactosaminiltransferasas/genética , N-Acetilgalactosaminiltransferasas/metabolismo , Creatina Quinasa
2.
Biochem Mol Biol Educ ; 50(6): 561-570, 2022 11.
Artículo en Inglés | MEDLINE | ID: mdl-36082801

RESUMEN

Biochemistry, a complicated basic course in health sciences, plays a fundamental role in describing pathogenic mechanism of illness in molecular terms, and is required to be learned for all medical students. Due to various obstacles to biochemistry learning and teaching, there is a pressing issue of curriculum reform to arouse the student's enthusiasm in biochemistry learning. In this study, an integrated topic-based biochemistry training program (TBBTP) combining the traditional lectures, question-based learning and experimental practices, was introduced in biochemistry teaching. Its effectiveness was evaluated through examination and questionnaire analyses. Consequently, we found that TBBTP promoted the dissemination of biochemical knowledge via traditional lecture, designated learning issues and experimental practices, and acquisition of various skills through practical operation, presentation, and independent learning. It motivated students to study biochemistry with intense interest and enthusiasm. This study explored the feasibility of the topic-based biochemistry teaching as a supplement to biochemistry curriculum in medical education and as a mainstream pedagogy in biochemistry lab.


Asunto(s)
Educación de Pregrado en Medicina , Estudiantes de Medicina , Humanos , Curriculum , Bioquímica/educación , Aprendizaje , Enseñanza
3.
Neurochem Res ; 47(11): 3355-3368, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-35962937

RESUMEN

Protein glycosylation plays a crucial role in central nervous system, and abnormal glycosylation has major implications for human diseases. This study aims to evaluate an etiological implication of the variation in glycosylation for Parkinson's disease (PD), a neurodegenerative disorder. Based on a PD mouse model constructed by the intraperitoneal injection with 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine, glycosylation variation was accessed using biotinylated lectin of dolichos biflorus agglutinin (DBA) specific for the exposed N-acetylgalactosamine linked to glycoprotein. Consequently, a glycoprotein with a significantly reduced N-acetylgalactosamination was identified as ADP/ATP translocase 1 (ANT1) by lectin affinity chromatography coupled with MALDI-TOF MS/MS (mass spectrometry), and confirmed by the analysis of dual co-immunofluorescence and Western blot. A tissue-specific distribution of de-N-acetylgalactosaminated ANT1 was found to be correlated with high risk of PD. At cellular level, an obvious co-aggregation between ANT1 and DBA was only found in the MPP+-induced PD-like cell model using dual co-immunofluorescence. Thus, we found that ANT1 was a potential glycoprotein with terminal N-acetylgalactosamine moiety, and the variation of glycosylation in ANT1 was associated with PD. This investigation provides an innovative insight in protein glycosylation with PD pathogenesis.


Asunto(s)
Enfermedad de Parkinson , 1-Metil-4-fenil-1,2,3,6-Tetrahidropiridina , Acetilgalactosamina , Translocador 1 del Nucleótido Adenina , Adenosina Difosfato/metabolismo , Animales , Glicoproteínas/metabolismo , Ratones , Translocasas Mitocondriales de ADP y ATP/metabolismo , Enfermedad de Parkinson/metabolismo , Espectrometría de Masas en Tándem
4.
Cell Biosci ; 11(1): 130, 2021 Jul 10.
Artículo en Inglés | MEDLINE | ID: mdl-34246309

RESUMEN

BACKGROUND: ADP/ATP translocase 1 (ANT1) is involved in the exchange of cytosolic ADP and mitochondrial ATP, and its defection plays an important role in mitochondrial pathogenesis. To reveal an etiological implication of ANT1 for Parkinson's disease (PD), a neurodegenerative disorder, a mouse model treated with 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine and neuroblastoma cell model induced by 1-methyl-4-pehny1-pyridine were utilized in this study. RESULTS: The tissue-specific abundance in ANT1 in mouse brains was accessed using the analysis of Western blot and immunohistochemistry. Down-regulated soluble ANT1 was found to be correlated with PD, and ANT1 was associated with PD pathogenesis via forming protein aggregates with α-synuclein. This finding was confirmed at cellular level using neuroblastoma cell models. ANT1 supplement in neuronal cells revealed the protective roles of ANT1 against cytotoxicity caused by MPP+. Protein interaction assay, coupled with the analysis of LC-MS/MS, silver-stained SDS-PAGE and Western blot against anti-ANT1 antibody respectively, illustrated the interaction of ANT1 with α-synuclein using the expressed α-synuclein as a bite. Additionally, a significant increasing ROSs was detected in the MPP+-treated cells. CONCLUSIONS: This study indicated that ANT1 was a potentially causative factor of PD, and led to neuropathogenic injury via promoting the formation of protein aggregates with α-synuclein. This investigation potentially promotes an innovative understanding of ANT1 on the etiology of PD and provides valuable information on developing potential drug targets in PD treatment or reliable biomarkers in PD prognostication.

5.
Gene Expr Patterns ; 38: 119151, 2020 12.
Artículo en Inglés | MEDLINE | ID: mdl-33132190

RESUMEN

During early embryogenesis, mammary glands are derived from surface ectoderm and their morphogenesis is controlled by mammary stem cells (MaSCs) and epithelial-mesenchymal transition (EMT). Mammary anlagen stage (E13.5-15.5) is an important stage for fetal mice to achieve EMT dependent mammary morphogenesis. And the characteristics of mammary anlagen repopulating cell population (MaRC) should be identified for understanding its stemness at earlier embryonic stage. Here we quantify and characterize MaSCs proportion at mammary anlagen stage. Compared with adult mouse mammary gland, our data revealed that E14.5 mammary anlagen exhibit higher stem cell activities. Then we purified mammary anlagen cell populations depending on the expression levels of CD24 and CD49f in mouse mammary anlagen, and identified an unique MaRC population (Lin-CD24medCD49f+) by real-time PCR, transplantation and mammosphere forming assays. In addition, by comparing with adult MaSC (Lin-CD24+CD29hi) and differentiated mammary anlagen cells, we find that E14.5 mouse MaRC population exhibit gene expression programs related to mesenchymal properties. To further identify the cell types of E14.5 mouse MaRC population, the expressions of K8, K14, K18, e-cadherin, n-cadherin and vimentin in mammary anlagen Lin-CD24medCD49f + cells were detected by immunofluorescence assay. These findings verified that the undifferentiated E14.5 mouse MaRC population is a heterogeneous population with mesenchymal property, which is associated with cell stemness and mammary duct morphogenesis.


Asunto(s)
Autorrenovación de las Células , Glándulas Mamarias Humanas/citología , Células Madre Mesenquimatosas/citología , Células Madre Embrionarias de Ratones/citología , Animales , Antígeno CD24/genética , Antígeno CD24/metabolismo , Cadherinas/genética , Cadherinas/metabolismo , Células Cultivadas , Transición Epitelial-Mesenquimal , Femenino , Humanos , Integrina alfa6/genética , Integrina alfa6/metabolismo , Glándulas Mamarias Humanas/embriología , Células Madre Mesenquimatosas/metabolismo , Células Madre Mesenquimatosas/fisiología , Ratones , Ratones Endogámicos C57BL , Morfogénesis , Células Madre Embrionarias de Ratones/metabolismo , Células Madre Embrionarias de Ratones/fisiología
6.
J Microbiol Biotechnol ; 29(8): 1221-1229, 2019 Aug 28.
Artículo en Inglés | MEDLINE | ID: mdl-31370112

RESUMEN

Mycobacterium tuberculosis, a causative pathogen of tuberculosis (TB), still threatens human health worldwide. To find a novel drug to eradicate this pathogen, we tested taurine-5- bromosalicylaldehyde Schiff base (TBSSB) as an innovative anti-mycobacterial drug using Mycobacterium smegmatis as a surrogate model for M. tuberculosis. We investigated the antimicrobial activity of TBSSB against M. smegmatis by plotting growth curves, examined the effect of TBSSB on biofilm formation, observed morphological changes by scanning electron microscopy and transmission electron microscopy, and detected differentially expressed proteins using two-dimensional gel electrophoresis coupled with mass spectrometry. TBSSB inhibited mycobacterial growth and biofilm formation, altered cell ultrastructure and intracellular content, and inhibited cell division. Furthermore, M. smegmatis adapted itself to TBSSB inhibition by regulating the metabolic pathways and enzymatic activities of the identified proteins. NDMA-dependent methanol dehydrogenase, NAD(P)H nitroreductase, and amidohydrolase AmiB1 appear to be pivotal factors to regulate the M. smegmatis survival under TBSSB. Our dataset reinforced the idea that Schiff base-taurine compounds have the potential to be developed as novel anti-mycobacterial drugs.


Asunto(s)
Aldehídos/farmacología , Antibacterianos/farmacología , Mycobacterium smegmatis/efectos de los fármacos , Proteómica , Bases de Schiff/farmacología , Taurina/análogos & derivados , Proteínas Bacterianas/efectos de los fármacos , Biopelículas/efectos de los fármacos , Biopelículas/crecimiento & desarrollo , Pared Celular/efectos de los fármacos , Redes y Vías Metabólicas/efectos de los fármacos , Mycobacterium smegmatis/crecimiento & desarrollo , Mycobacterium smegmatis/ultraestructura , Mycobacterium tuberculosis , Taurina/farmacología
7.
Aging (Albany NY) ; 11(13): 4597-4610, 2019 07 09.
Artículo en Inglés | MEDLINE | ID: mdl-31289257

RESUMEN

Aberrant glycosylation of proteins has major implications for human diseases. To determine whether protein glycosylation contributes to the pathogenesis of Parkinson's disease (PD), a mouse model of PD was established by injection of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP). Induction of PD-like features was verified by assessing motor impairment and confirming reductions in biological markers, including dopamine, 5-hydroxytryptamine and tyrosine hydroxylase, as well as the aggregation of α-synuclein. Altered glycosylation was detected using biotinylated agaracus bisporus lectin, which specifically binds exposed Gal-(ß-1,3)-GalNAc linked to glycoproteins. Subsequent lectin affinity chromatography coupled with mass spectrometry revealed enhanced glycosylation of microtubule-associated protein 6 (MAP6) in PD mice as compared to healthy controls. In situ dual co-immunofluorescence analysis and immunoblotting confirmed that MAP6 is glycosylated with Gal-(ß-1,3)-GalNAc oligosaccharides, which in turn alters the distribution and structure of MAP6 complexes within neurons. This is the first study to described MAP6 as a glycoprotein containing Gal-(ß-1,3)-GalNAc oligosaccharides and to show that hyperglycosylation of MAP6 is strongly associated with the pathogenesis of PD. These findings provide potentially valuable information for developing new therapeutic targets for the treatment of PD as well as reliably prognostic biomarkers.


Asunto(s)
Galectinas/metabolismo , Proteínas Asociadas a Microtúbulos/metabolismo , Oligosacáridos/metabolismo , Enfermedad de Parkinson/metabolismo , 1-Metil-4-fenil-1,2,3,6-Tetrahidropiridina , Animales , Cromatografía de Afinidad , Modelos Animales de Enfermedad , Técnica del Anticuerpo Fluorescente , Glicoproteínas/metabolismo , Glicosilación , Immunoblotting , Masculino , Ratones , Ratones Endogámicos C57BL , Enfermedad de Parkinson/patología , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
8.
Enzyme Microb Technol ; 126: 32-40, 2019 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-31000162

RESUMEN

Functionally uncharacterized gene Rv3627c is predicted to encode a carboxypeptidase in the pathogen of Mycobacterium tuberculosis (M. tuberculosis), which remains a major threat to human health. Here, we sought to reveal the function of Rv3627c and to elucidate its effects on mycobacterial growth. Rv3627c was purified from E. coli using Ni2+-NTA affinity chromatography, and its identity was confirmed with a monoclonal anti-polyhistidine antibody. An enzyme activity assay involving a d-amino acid oxidase-peroxidase coupled colorimetric reaction and high-performance thin layer chromatography was performed. A pull-down assay and MS-MS were also employed to identify putative interaction partners of Rv3627c. Scanning electron microscopy and transmission electron microscopy were performed to observe any morphological alterations to Mycobacterium smegmatis (M. smegmatis). We successfully obtained soluble expressed Rv3627c and identified it as carboxypeptidase using prepared peptidoglycan. Four proteins were identified as potential interaction partners with Rv3627c based on results obtained from both a pull-down assay and MS/MS analysis. Rv3627c over-expression induced M. smegmatis cells to become elongated, and promoted the formation of increased numbers of Z-rings. Rv3627c, a novel carboxypeptidase in M. tuberculosis identified in this study, exerts important effects on mycobacterial cell morphology and cell division. This functional information provides a promising insight into anti-mycobacterial target designs.


Asunto(s)
Proteínas Bacterianas/metabolismo , Carboxipeptidasas/metabolismo , División Celular , Mycobacterium smegmatis/citología , Mycobacterium smegmatis/enzimología , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Carboxipeptidasas/genética , Clonación Molecular , Dipéptidos/metabolismo , Humanos , Mapas de Interacción de Proteínas , Homología de Secuencia
9.
Microbiologyopen ; 8(9): e00819, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-30828981

RESUMEN

D-Alanyl-D-alanine ligase A (DdlA) catalyses the dimerization of two D-alanines yielding D-alanyl-D-alanine required for mycobacterial peptidoglycan biosynthesis, and is a promising antimycobacterial drug target. To better understand the roles of DdlA in mycobacteria in vivo, we established a cell model in which DdlA expression was specifically downregulated by ddlA antisense RNA by introducing a 380 bp ddlA fragment into pMind followed by transforming the construct into nonpathogenic Mycobacterium smegmatis. The M. smegmatis cell model was verified by plotting the growth inhibition curves and quantifying endogenous DdlA expression using a polyclonal anti-DdlA antibody produced from the expressed DdlA. Scanning electron microscopy and transmission electron microscopy were used to investigate mycobacterial morphology. Bidimensional gel electrophoresis and mass spectrometry were used to analyze differentially expressed proteins. Consequently, the successful construction of the M. smegmatis cell model was verified. The morphological investigation of the model indicated that DdlA deficiency led to an increased number of Z rings and a rearrangement of intracellular content, including a clear nucleoid and visible filamentous DNA. Proteomic techniques identified six upregulated and 14 downregulated proteins that interacted with each other to permit cell survival by forming a regulatory network under DdlA deficiency. Finally, our data revealed that DdlA deficiency inhibited cell division in mycobacteria and attenuated the process of carbohydrate catabolism and the pathway of fatty acid anabolism, while maintaining active protein degradation and synthesis. N-Nitrosodimethylamine (NDMA)-dependent methanol dehydrogenase (MSMEG_6242) and fumonisin (MSMEG_1419) were identified as potential antimycobacterial drug targets.


Asunto(s)
Mycobacterium smegmatis/enzimología , Mycobacterium smegmatis/crecimiento & desarrollo , Péptido Sintasas/deficiencia , Proteoma/análisis , Electroforesis en Gel Bidimensional , Técnicas de Silenciamiento del Gen , Espectrometría de Masas , Microscopía Electroquímica de Rastreo , Microscopía Electrónica de Transmisión , Mycobacterium smegmatis/química , Mycobacterium smegmatis/ultraestructura , Péptido Sintasas/metabolismo , Virulencia
10.
Molecules ; 23(2)2018 Feb 03.
Artículo en Inglés | MEDLINE | ID: mdl-29401644

RESUMEN

(1) Background: d-alanine-d-alanine ligase (DdlA), an effective target for drug development to combat against Mycobacterium tuberculosis (Mtb), which threatens human health globally, supplies a substrate of d-alanyl-d-alanine for peptidoglycan crosslinking by catalyzing the dimerization of two d-alanines. To obtain a better understanding of DdlA profiles and develop a colorimetric assay for high-throughput inhibitor screening, we focused on explicating and characterizing Tb-DdlA. (2) Methods and Results: Rv2981c (ddlA) was expressed in Escherichia coli, and the purified Tb-DdlA was identified using (anti)-polyhistidine antibody followed by DdlA activity confirmation by measuring the released orthophosphate via colorimetric assay and the yielded d-alanyl-d-alanine through high performance thin layer chromatography (HP-TLC). The kinetic assays on Tb-DdlA indicated that Tb-DdlA exhibited a higher affinity to ATP (KmATP: 50.327 ± 4.652 µmol/L) than alanine (KmAla: 1.011 ± 0.094 mmol/L). A colorimetric assay for Tb-DdlA activity was developed for high-throughput screening of DdlA inhibitors in this study. In addition, we presented an analysis on Tb-DdlA interaction partners by pull-down assay and MS/MS. Eight putative interaction partners of Tb-DdlA were identified. (3) Conclusions: Our dataset provided a valuable resource for exploring Tb-DdlA biology, and developed an easy colorimetric assay for screening of Tb-DdlA inhibitors.


Asunto(s)
Adenosina Trifosfato/metabolismo , Alanina/metabolismo , Proteínas Bacterianas/metabolismo , Dipéptidos/metabolismo , Mycobacterium tuberculosis/enzimología , Péptido Sintasas/metabolismo , Proteínas Bacterianas/antagonistas & inhibidores , Proteínas Bacterianas/genética , Bioensayo , Clonación Molecular , Inhibidores Enzimáticos/química , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Cinética , Mycobacterium tuberculosis/genética , Péptido Sintasas/antagonistas & inhibidores , Péptido Sintasas/genética , Plásmidos/química , Plásmidos/metabolismo , Unión Proteica , Mapeo de Interacción de Proteínas , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato
11.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(6): 3989-3990, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-25543912

RESUMEN

In this study, we presented the complete mitochondrial genome of the Sharpnose stingray Himantura gerrardi for the first time, which was 17,685 bp in length and contained 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a putative control region. The overall nucleotide composition was 30.1% A, 27.5% C, 14.5% G and 28.0% T. A total of 22 bp overlaps and 83 bp short intergenic spaces were found in the mitogenome. Two start codons (ATG and GTG) and two stop codons (TAG and TAA/T) were used in the protein-coding genes. The origin of L-strand replication (OL) sequence formed a hairpin structure between the tRNA-Asn and tRNA-Cys genes. The termination associated sequence (TAS) formed a hairpin structure near the tRNA-Pro in the control region.


Asunto(s)
Orden Génico , Genes Mitocondriales , Genoma Mitocondrial , Rajidae/genética , Animales , Composición de Base , Codón Iniciador , Codón de Terminación , Evolución Molecular , Tamaño del Genoma , Análisis de Secuencia de ADN
12.
Mitochondrial DNA B Resour ; 1(1): 304-305, 2016 Apr 12.
Artículo en Inglés | MEDLINE | ID: mdl-33473474

RESUMEN

The complete mitogenome of the smalleye pygmy shark Squaliolus aliae (Squaliformes: Dalatiidae) is presented in this study firstly. It is 16,717 bp with a nucleotide base composition of 30.7% A, 26.2% C, 14.7% G and 28.5% T, containing 37 genes and a control region with typical order as vertebrate. There are 23bp short intergenic spaces and 28bp overlaps locating in gene junctions. 2 rRNA genes are located in heavy strand. Twenty-two tRNA genes range from 67bp (tRNA-Cys) to 75 bp (tRNA-Leu1). Two initial codons (ATG and GTG) and two terminal codons (TAA and T) are found in protein-coding genes. The phylogenetic result shows that S. aliae in this study is clustered to the (Somniosus pacificus + Squalidae).

13.
Mitochondrial DNA B Resour ; 1(1): 369-370, 2016 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-33473487

RESUMEN

In this study, the mitogenome of the blackspotted catshark Halaelurus burgeri was first determined. This circle molecular was rich in A (30.7%)+T (30.4%), poor in C (25.0%)+G (13.8%) and contained 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a longest control region (3481 bp with lots of repeated motifs) in sharks. Two start codons (ATG and GTG) and two stop codons (TAG and TAA/T) were found in the protein-coding genes. The 22 tRNA genes ranged from 66 bp (tRNA-Ser2) to 75 bp (tRNA-Leu1). The phylogenetic result showed that H. burgeri did not cluster to the two species of Scyliorhinidae (Cephaloscyllium umbratile and Scyliorhinus canicula).

14.
Mitochondrial DNA B Resour ; 1(1): 443-444, 2016 Jul 08.
Artículo en Inglés | MEDLINE | ID: mdl-33473513

RESUMEN

In this study, the complete mitochondrial genome of the Borneo leg skate Sinobatis borneensis (Rajiformes, Anacanthobatidae) was determined. It had circular molecules (16,701 bp), consisting of 37 genes with a typical gene order in vertebrate mitogenome. In the whole mitogenome, there were 28 bp short intergenic and 31 bp overlaps, respectively, located in 12 and 7 gene junctions. The nucleotide composition was 31.1% A, 26.0% C, 13.9% G and 29.1% T. Two start codons (GTG and ATG) and two stop codons (TAG, TAA/T) were used in the protein-coding genes. The 22 tRNA genes ranged from 66 bp (tRNA-Cys) to 75 bp (tRNA-Leu1 and tRNA-Lys). The phylogenetic result showed that S. borneensis was clustered with the Atlantoraja castelnaui and Pavoraja nitida.

15.
Mitochondrial DNA B Resour ; 1(1): 297-298, 2016 Apr 12.
Artículo en Inglés | MEDLINE | ID: mdl-33644364

RESUMEN

We determined the complete mitochondrial genome of the Jenkins whipray Himantura jenkinsii. The total length of the mitogenome was 17, 670 bp, consisted of 37 genes with typical gene order in vertebrate mitogenome. The nucleotide composition was: 30.5% A, 29.1% T, 26.5% C and 13.9% G. It had 70 bp short intergenic spaces and 22 bp overlaps. Two start codons (GTG and ATG) and two stop codons (TAG and TAA/T) were used in the protein-coding genes. The 22 tRNA genes were ranged from 67 bp (tRNA-Ser2) to 75 bp (tRNA-Leu1). The phylogenetic result showed that H. jenkinsii was clustered with the Hortle's whipray H. hortlei.

16.
Mitochondrial DNA B Resour ; 1(1): 315-317, 2016 Apr 18.
Artículo en Inglés | MEDLINE | ID: mdl-33644367

RESUMEN

We first determined the complete mitochondrial genome of the White-spotted guitarfish Rhynchobatus australiae (Rajiformes, Rhinobatidae). The complete mitogenome was 16,804 bp, with a base composition of 32.3% A, 27.5% T, 26.9% C and 13.3% G, containing 13 protein-coding genes, two rRNAs, 22 tRNAs and a control region (D-loop). It had 35 bp short intergenic spaces and 39 bp overlaps between genes. The gene order and composition of R. australiae was similar to most other fishes. The codon usage followed the typical vertebrate mitochondrial pattern (ATG or GTG for start codon and TAA or T for stop codon). The phylogenetic result showed that R. australiae was clustered with the Rhinobatos.

17.
Acta Biomater ; 30: 233-245, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26593786

RESUMEN

Previous studies have demonstrated that several mechanisms, including numerous inhibitory molecules, weak neurotrophic stimulation and deficient intrinsic regenerative responses, collectively contribute to the failure of mature spinal cord axon regeneration. Thus, combinatorial therapies targeting multiple mechanisms have attracted much attention. In the present study, a porous collagen scaffold was used to support neuronal attachment and bridge axonal regeneration. The scaffold was specifically functionalized using neutralizing proteins (CBD-EphA4LBD, CBD-PlexinB1LBD and NEP1-40) and collagen-binding neurotrophic factors (CBD-BDNF and CBD-NT3) to simultaneously antagonize myelin inhibitory molecules (ephrinB3, Sema4D and Nogo) and exert neurotrophic protection and stimulation. Cerebellar granular neurons cultured on the functionalized collagen scaffold promoted neurite outgrowth in the presence of myelin. Furthermore, a full combinatorial treatment comprising functionalized scaffold implantation and cAMP administration was developed to evaluate the synergistic repair ability in a rat T10 complete removal spinal cord injury model. The results showed that full combinatorial therapy exhibited the greatest advantage in reducing the volume of cavitation, facilitating axonal regeneration, and promoting neuronal generation. The newborn neurons generated in the lesion area could form the neuronal relay and enhance the locomotion recovery after severe spinal cord injury. STATEMENT OF SIGNIFICANCE: A porous collagen scaffold was specifically functionalized with neutralizing proteins and neurotrophic factors to antagonize the myelin inhibitory molecules and exert neurotrophic protection and stimulation for spinal cord regeneration. Cerebellar granular neurons seeded on the functionalized collagen scaffold showed enhanced neurite outgrowth ability in vitro. The functionalized scaffold implantation combined with cAMP administration exhibited synergistic repair ability for rat T10 complete spinal cord transection injury.


Asunto(s)
Colágeno , Traumatismos de la Médula Espinal/terapia , Regeneración de la Medula Espinal/efectos de los fármacos , Andamios del Tejido/química , Animales , Colágeno/química , Colágeno/farmacología , AMP Cíclico/química , AMP Cíclico/farmacología , Modelos Animales de Enfermedad , Humanos , Ratas , Traumatismos de la Médula Espinal/metabolismo , Traumatismos de la Médula Espinal/patología
18.
ACS Appl Mater Interfaces ; 7(25): 13960-71, 2015 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-26034998

RESUMEN

Research has demonstrated that many myelin-associated inhibitory molecules jointly contribute to the failure of adult spinal cord regeneration. Therapies comprehensively targeting the multiple inhibitory nature of the injured spinal cord are being concerned. Here, two collagen-binding proteins, CBD-EphA4LBD and CBD-PlexinB1LBD, were constructed, respectively, to neutralize the axon guidance molecules ephrinB3 and sema4D that inhibit the regeneration of nerve fibers. The two neutralizing proteins have proven their ability to specifically bind collagen and to continuously release from collagen scaffolds. They could also promote neurites outgrowth of cerebellar granular neurons and dorsal root ganglion neurons in vitro. Subsequently, the functionalized collagen scaffolds by physically absorbing NEP1-40 and immobilizing CBD-EphA4LBD and CBD-PlexinB1LBD were transplanted into a rat T10 complete spinal cord transection model. Our results showed that rats that received the treatment of transplanting the functionalized collagen scaffold exhibited great advantage on axonal regeneration and locomotion recovery after spinal cord injury.


Asunto(s)
Colágeno/metabolismo , Neuritas/efectos de los fármacos , Traumatismos de la Médula Espinal/tratamiento farmacológico , Regeneración de la Medula Espinal/efectos de los fármacos , Andamios del Tejido/química , Animales , Clonación Molecular , Modelos Animales de Enfermedad , Femenino , Proteínas Activadoras de GTPasa/genética , Proteínas Activadoras de GTPasa/metabolismo , Humanos , Vaina de Mielina/efectos de los fármacos , Vaina de Mielina/metabolismo , Proteínas del Tejido Nervioso , Neuritas/fisiología , Unión Proteica , Ratas , Ratas Sprague-Dawley , Receptor EphA4/genética , Receptor EphA4/metabolismo , Receptores de Superficie Celular/genética , Receptores de Superficie Celular/metabolismo , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Proteínas Recombinantes de Fusión/farmacología , Proteínas Recombinantes de Fusión/uso terapéutico , Regeneración de la Medula Espinal/fisiología
19.
Tissue Eng Part A ; 21(1-2): 62-74, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24941993

RESUMEN

Brain-derived neurotrophic factor (BDNF) exerts therapeutic effects following intracerebral hemorrhage (ICH). However, it is difficult to maintain sufficient concentrations in the hemorrhage hemisphere. We demonstrated previously that BDNF fused to a collagen-binding domain (CBD) could bind to collagen in the ventricular ependyma and stimulate cell proliferation in the subventricular zone (SVZ). In this study, we verified the therapeutic effects of CBD-BDNF in the rat ICH model induced by bacterial collagenase by injecting CBD-BDNF into the lateral ventricle of ICH rats. The results demonstrated that CBD-BDNF was retained at high levels in the hemorrhage hemisphere, where it promoted neural regeneration and angiogenesis, reduced tissue loss, and improved functional recovery.


Asunto(s)
Factor Neurotrófico Derivado del Encéfalo/uso terapéutico , Hemorragia Cerebral/tratamiento farmacológico , Hemorragia Cerebral/fisiopatología , Colágeno/metabolismo , Regeneración Nerviosa , Proteínas Recombinantes de Fusión/uso terapéutico , Recuperación de la Función , Animales , Conducta Animal , Encéfalo/irrigación sanguínea , Encéfalo/metabolismo , Encéfalo/patología , Edema Encefálico/complicaciones , Edema Encefálico/tratamiento farmacológico , Edema Encefálico/patología , Edema Encefálico/fisiopatología , Factor Neurotrófico Derivado del Encéfalo/farmacología , Diferenciación Celular/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Hemorragia Cerebral/complicaciones , Hemorragia Cerebral/patología , Modelos Animales de Enfermedad , Glucosa/metabolismo , Hematoma/complicaciones , Hematoma/tratamiento farmacológico , Hematoma/patología , Hematoma/fisiopatología , Hemodinámica/efectos de los fármacos , Inmunohistoquímica , Imagen por Resonancia Magnética , Masculino , Neovascularización Fisiológica/efectos de los fármacos , Regeneración Nerviosa/efectos de los fármacos , Neurogénesis/efectos de los fármacos , Tomografía de Emisión de Positrones , Unión Proteica/efectos de los fármacos , Ratas Sprague-Dawley , Proteínas Recombinantes de Fusión/farmacología , Recuperación de la Función/efectos de los fármacos , Tomografía Computarizada de Emisión de Fotón Único
20.
Biomaterials ; 41: 89-96, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25522968

RESUMEN

Spinal cord injury (SCI) is still a worldwide clinical challenge for which there is no viable therapeutic method. We focused on developing combinatorial methods targeting the complex pathological process of SCI. In this study, we implanted linear-ordered collagen scaffold (LOCS) fibers with collagen binding brain-derived neurotrophic factor (BDNF) by tagging a collagen-binding domain (CBD) (LOCS + CBD-BDNF) in completely transected canine SCI with multisystem rehabilitation to validate its potential therapeutic effect through a long-term (38 weeks) observation. We found that LOCS + CBD-BDNF implants strikingly promoted locomotion and functional sensory recovery, with some dogs standing unassisted and transiently moving. Further histological analysis showed that administration of LOCS + CBD-BDNF reduced lesion volume, decreased collagen deposits, promoted axon regeneration and improved myelination, leading to functional recovery. Collectively, LOCS + CBD-BDNF showed striking therapeutic effect on completely transected canine SCI model and it is the first time to report such breakthrough in the war with SCI. Undoubtedly, it is a potentially promising therapeutic method for SCI paralysis or other movement disorders caused by neurological diseases in the future.


Asunto(s)
Factor Neurotrófico Derivado del Encéfalo/farmacología , Colágeno/farmacología , Recuperación de la Función/efectos de los fármacos , Traumatismos de la Médula Espinal/fisiopatología , Traumatismos de la Médula Espinal/terapia , Andamios del Tejido/química , Animales , Axones/efectos de los fármacos , Axones/patología , Bovinos , Perros , Humanos , Vaina de Mielina/metabolismo , Regeneración Nerviosa/efectos de los fármacos , Médula Espinal/efectos de los fármacos , Médula Espinal/patología , Médula Espinal/ultraestructura , Traumatismos de la Médula Espinal/patología
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